RoBiC and SVD-k + BiCluster Bicluster Characteristics - Prognostic/Diagnostic Datasets



 Prognostic Datasets Diagnostic Datasets

P1
Breast Cancer 		P2
AML
(Outcome) 		P3
Central
Nervous System 		P4
Prostate
(Outcome) 		  D1
Lung Cancer
 		D2
AML-ALL
 D3
Colon Cancer
 D4
Prostate
Approach RoBiC SVD RoBiC SVD RoBiC SVD RoBiC SVD RoBiC SVD RoBiC SVD RoBiC SVD RoBiC SVD
# of patients in 0 bicluster 1
 29
 0
 0
 0
 4
 3
 0
 32
 32
 34
 34
 23
 3
 34
 72
# of patients in 1 bicluster 11
 11
 0
 0
 0
 17
 2
 0
 0
 18
 0
 0
 18
 9
 50
 12
# of patients in >1 biclusters 64
 36
 15
 15
 60
 39
 16
 21
 149
 131
 38
 38
 21
 50
 52
 52

















Min / Max  # of patients in a bicluster 2 / 62
 2  / 17 2 / 11
 2 / 13 2 / 58
 2 / 23 2 / 11
 2 / 9
 2 / 149
 2 / 149 2 / 38
 6 / 38 2 / 10
 2 / 26 2 / 72
 2 / 46
Average # of patients in a bicluster 10
 8
 4
 5
 20
 8
 3
 4
 53
 27 10
 24 4
 10
 19
 19
Median # of patients in a bicluster 5.5
 7.5
 2
 4
 24
 8
 2
 3
 13.5
 19
 7
 28.5 4
 10
 11.5
 18.5

















# of genes in 0 biclusters 13,240
 16,370 5,768 6,525 4,356 6,426 9,738 11,714
 8187
 11,549 4189
 6,379 432
 1,528 7653
 11,627
# of genes in 1 bicluster 4,574
 2,291 324 150 568 188 1,154 319
 4148
 230 2679
 157 470
 91 4282
 187
# of genes in >1 biclusters 5,838
 4,964 1,037 454 2,205 515 1,708 567
 198
 754 261
 593 1098
 381 665
 786

















Min / Max  # of genes in a bicluster 10 / 4525
   352 / 1,392 2 / 1096 135 2 / 1597 17 / 290 2 / 2147 7 / 390
 2 / 2134
 12 / 417
 2 / 2229
 33 / 309 16 / 1487
 9 / 181 2 / 2189
 24 / 409
Average # of genes in a bicluster 844
 1,041 162
 265 104 162 328
 207
 160
 417
 125
 204 292
 110 206
 250
Median # of genes in a bicluster 344
 1,042 13 215 9.5 176.5 164
 202
 9
 244
 14
 214.5 109
 106.5 14.5
 267

















Average bicluster size 10,793
 8,809 901 1,159 1648 1,649 1545 813
 22,342 7,241 4,107 5,126 1,304 1,281 6,639 4,706
# of (gene,patient) pairs in 0 biclusters 1,537,504 1,654,959 92,788 99,983 315,705 408,708 234,.828 255,790 1,622,966 2,183,595 401,604 487,502 100,616 107,194 1,530,464 1,678509
# of (gene,patient) pairs in 1 bicluster 211,316 83,209 5,873 2,422 87,301 10,007 19,926 4,806 629,282 36,536 103,708 6,262 17,503 8,128 173,709 12,167
# of (gene,patient) pairs in >1 biclusters 46,680 57,332 8,274 4,530 24,734 9,025 9,846 4,004 16,225 48,342 7,976 19,524 5,881 8,678 9,427 22,924