Refereed Publications - 2006

M. Carbonaro, M. Cutumisu, H Duff, S. Gillis, C. Onuczko, J. Schaeffer, A. Schumacher, J. Siegel, D. Szafron, and K. Waugh, Adapting a Commercial Role-Playing Game for Educational Computer Game Production, GameOn North America, September 2006, 54-61. abstract or pdf.

Zhuang Guo, José Nelson Amaral,Duane Szafron and Yang Wang, Utilizing Field Usage Patterns for Java Heap Space Optimization, to appear in 16th Annual International Conference on Computer Science and Software Engineering (CASCON), October 2006, 8 ms., abstract or pdf.

Paras Mehta, José Nelson Amaral, Duane Szafron, Is MPI Suitable for a Generative Design-Pattern System?, Parallel Computing, 32 (7); 616-626, 2006. abstract or pdf.

Maria Cutumisu, Duane Szafron, Jonathan Schaeffer, Matthew McNaughton, Thomas Roy, Curtis Onuczko, and Mike Carbonaro, Generating Ambient Behaviors in Computer Role-Playing Games, IEEE Intelligent Systems, 21(5), Sept./Oct. 2006, 19-27. abstract or pdf. (A preliminary version of this paper appeared as: LNAI 3814, Springer-Verlag (Intetain Conference 05), 2005, 34-43).

Luca Pireddu, Duane Szafron, Paul Lu, and Russell Greiner, The Path-A metabolic pathway prediction web server, Nucleic Acids Research, Volume 34, July 2006, pp. W714-W719, abstract or browser version or pdf.

Brett Poulin, Roman Eisner, Duane Szafron, Paul Lu, Russ Greiner, D.S. Wishart, Alona Fyshe, Brandon Pearcy, Cam MacDonell and John Anvik, Visual Explanation of Evidence in Additive Classifiers, 18th Conference on Innovative Applications of Arificial Intelligence (IAAI), July 2006, 1822-1829. abstract or pdf.

A. Fyshe and D. Szafron, Term Generalization and Synonym Resolution for Biological Abstracts: Using the Gene Ontology for Subcellular Localization Prediction, to appear in the BioNLP Workshop at the Human Language Technology conference - North American chapter of the Association for Computational Linguistics (HLT-NAACL), June 2006, 17-24. abstract or pdf.

M. Cutumisu, C. Onuczko, D. Szafron, J. Schaeffer, M. McNaughton, T. Roy, J. Siegel and M. Carbonaro, Evaluating Pattern Catalogs - The Computer Games Experience, 28th International Conference on Software Engineering (ICSE), May 2006, 132-141. abstract or pdf.

A. Driga, P. Lu, J. Schaeffer, D. Szafron, K. Charter and I. Parsons. FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment, Algorithmica, 2006, 337-375. abstract or pdf.