Revised May 14, 2007

Refereed Publications - 2005

2005 CICBCB - Pathway Analyst

Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, and David Wishart, Pathway Analyst—Automated Metabolic Pathway Prediction, Proceedings of 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, November 2005, pp. 243-250.abstract or pdf.

2005 CICBCB - Hierarchical Classification

Roman Eisner, Brett Poulin, Duane Szafron, Paul Lu and Russ Greiner, Improving Protein Function Prediction using the Hierarchical Structure of the Gene Ontology, Proceedings of 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, November 2005, pp. 354-363, abstract or pdf.

2005 NAR WS

Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, AnChi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russ Greiner and David S. Wishart, BASys: A Web Server for Automated Bacterial Genome Annotation, Nucleic Acids Research, Volume 33, July 2005, pp. W455-W459, abstract or html or pdf.

2005 JPDC

J. Anvika, J. Schaeffer, D. Szafron, and K. Tan. Asserting the utility of CO2P3S using the Cowichan Problem Set, Journal of Parallel and Distributed Computing, vol. 65, pp. 1542-1557, 2005, abstract or pdf.

2005 Game On

C. Onuczko, M. Cutumisu, D. Szafron, J. Schaeffer, M. McNaughton, T. Roy, K. Waugh, M. Carbonaro and J. Siegel, A Pattern Catalog For Computer Role Playing Games, GameOn North America, August 2005, pp. 33-38, abstract or pdf.

2005 Digra Mike Carbonaro, Maria Cutumisu, Matthew McNaughton, Curtis Onuczko, Thomas Roy, Jonathan Schaeffer, Duane Szafron, Stephanie Gillis and Sabrina Kratchmer, Interactive Story Writing in the Classroom: Using Computer Games, International DiGRA Conference 2005, June 2005, pp. 323-338, abstract or pdf.

2005 HIPS

Zhuang Guo, Jonathan Schaeffer, Duane Szafron and Patrick Earl. Using Generative Design Patterns to Develop Network Server Applications, 10th International Workshop on High-Level Parallel Programming Models and Supportive Environments (HIPS'2005) at IPDPS, pp. 178 (8 pages on CD-ROM), April 2005, abstract or pdf.

2005 NAR DB

Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Brett Poulin, Roman Eisner, Danny Ngo, and Nicholas Lamb, PA-GOSUB: A Searchable Database of Model Organism Protein Sequences With Their Predicted GO Molecular Function and Subcellular Localization, Nucleic Acids Research, Volume 33, January 2005, pp. D147-D152, abstract or html or pdf.

2005 IMEJ Duane Szafron, Mike Carbonaro, Maria Cutumisu, Stephanie Gillis, Matthew McNaughton, Curtis Onuczko, Thomas Roy and Jonathan Schaeffer, Writing Interactive Stories in the Classroom, Interactive Multimedia Electronic Journal of Computer-Enhanced Learning (IMEJ), Volume 7, Number 1, May 2005, 13 pages, abstract or html.