#
Psi-blast Iterations
Top Homologs
KWORD
IPR
SCELL
Accuracy
I
1
3
phrase
yes
phrase
.934
II
1
3
phrase
yes
no
.924
III
1
3
phrase
no
phrase
.934
IV
1
3
no
no
phrase
.922
V
2
3
phrase
yes
phrase
.932
VI
1
2
phrase
yes
phrase
.935
VII
1
4
phrase
yes
phrase
.936
VIII
1
3
words
yes
words
.929

Here is the pre-defined SCELL pharses.

*For ontology and other abbreviations, see here

Table I
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1778 21
26 12 0 4 20
1861 .955
ext 3 217 6
0 2 1
24
253 .858
per 6 15
336 4 0 6 18
385
.873
inn 5 1 4 411 0 0 11
432 .951
wal
0 1
0 0 43 1 1
46 .935
out 0 4
2 2 0 181 8
197 .919
colSUM 1792 259
374 429 45 193 82
3174  O.R. = .934
precision .992 .838 .898 .958 .956 .938 S.C. = .974
  O.P. = .959
specificity
.989
.986
.986
.993
.999
.996


O.S. = .990

Table II
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1759 36
27 19 0 0
20
1861 .945
ext 4
216 6
1
2 0
24
253 .854
per 7
25
329 1
0 5
18
385
.855
inn 6
2
6
407 0 0 11
432 .942
wal
0 0
0 0 43 2
1
46 .935
out 3
3
2 2 0 179 8
197 .909
colSUM 1779 282
370 430 45 186 82
3174  O.R. = .924
precision .989 .766 .889 .947 .956 .962 S.C. = .974
  O.P. = .949
specificity
.985
.977
.985
.992
.999
.998


O.S. = .986

Table III
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1779 19
25 13 0 5
20
1861 .956
ext 3 214 7
0 2 3
24
253 .846
per 8
12
334 7
0 6
18
385
.868
inn 5 1 4 411 0 0 11
432 .951
wal
0 1
0 0 43 1 1
46 .935
out 2
1
2 2 0 182 8
197 .924
colSUM 1797 248
372 433 45 197 82
3174  O.R. = .934
precision .990 .863 .898 .949 .956 .924 S.C. = .974
  O.P. = .958
specificity
.986
.988
.986
.992
.999
.995


O.S. = .988


Table IV
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1777 1
8
9
0 1
65
1861 .955
ext 1
195 7
1
2 1
46
253 .771
per 14
4
323 4
0 6
34
385
.839
inn 2
1 3
410 0 0 16
432 .949
wal
0 1
0 0 43 1 1
46 .935
out 1
0
3
0
0 178 15
197 .904
colSUM 1795 202 344 424 45 187 82
3174  O.R. = .922
precision .990 .965 .939 .967 .956 .952 S.C. = .944
  O.P. = .976
specificity
.986
.998
.992
.995
.999
.997


O.S. = .976


Table V
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1777 22
26 12 0 4 20
1861 .954
ext 3 217 6
0 2 1
24
253 .858
per 7
18
332 4 0 6 18
385
.862
inn 5 2
4 409 1
0 11
432 .946
wal
0 1
0 0 43 1 1
46 .935
out 1
3
2 2 0 181 8
197 .919
colSUM 1793 263
370 427 46 193 82
3174  O.R. = .932
precision .991 .825 .897 .957 .934 .938 S.C. = .974
  O.P. = .958
specificity
.988
.968
.987
.992
.986
.996


O.S. = .988


Table VI
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1778 20
28 9
0 3
23
1861 .955
ext 3 217 8
1
0
0
24
253 .858
per 6 14
337 4 0 6 18
385
.875
inn 5 2 3
411 0 0 11
432 .951
wal
0 1
0 0 43 1 1
46 .935
out 0 4
2 2 0 181 8
197 .919
colSUM 1792 258
378 427 43 191 85
3174  O.R. = .935
precision .992 .841 .892 .963 1.00
.948 S.C. = .973
  O.P. = .961
specificity
.989
.986
.985
.994
1.00
.997


O.S. = .990

Table VII
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1783 16
27 14
0 4
17
1861 .958
ext 3 215 6
0
2
3
24
253 .850
per 6 14
338 4 0 5
18
385
.878
inn 5 1 4
411 0 0 11
432 .951
wal
0 1
0 0 43 1 1
46 .935
out 1
4
2 1
0 181 8
197 .919
colSUM 1798 251
377 430 45 194 79
3174  O.R. = .936
precision .992 .857 .897 .956 .956
.933 S.C. = .975
  O.P. = .960
specificity
.989
.988
.986
.993
.999
.996


O.S. = .989

Table VIII
Prd ⇒
Obs ⇓
cyt  ext  per  inn  wal  out  N.P.  rowSUM   recall 
cyt 1770 24
32
14
0 1
20
1861 .951
ext 2
217 6
2
2
0
24
253 .858
per 6 18
330 7
0 6
18
385
.857
inn 4
1 5
410 0 1
11
432 .949
wal
0 1
0 0 43 1 1
46 .935
out 1
5
2 2
0 179 8
197 .909
colSUM 1783 266
375 435 45 188 82
3174  O.R. = .929
precision .993 .816 .880 .943 .956
.952 S.C. = .974
  O.P. = .954
specificity
.990
.983
.984
.991
.999
.997


O.S. = .989