Proteome Analyst Specialized Subcellular Localization Server v2.5

Summary The Proteome Analyst Specialized Subcellular Localization Server (PA-SUB) is part of Proteome Analyst (PA). PA is a web server built to predict protein properties, such as general function, in a high-throughput fashion. PA-SUB is specialized to predict the subcellular localization of proteins using established machine learning techniques. Please cite: Z. Lu, D. Szafron, R. Greiner, P. Lu, D.S. Wishart, B. Poulin, J. Anvik, C. Macdonell, and R. Eisner, Predicting Subcellular Localization of Proteins using Machine-Learned Classifiers, Bioinformatics 2004 20(4):547-556. abstract | pdf

Begin and View Analyses PA-SUB has been replaced by our latest PA3 server. Please use "Proteome Processor" in PA3 for subcell predictions. Goto PA3 Server

More Information For more information on Proteome Analyst Subcellular Predictions go to http://www.cs.ualberta.ca/~bioinfo/PA/Subcellular/. Because different organisms have different localization sites, we have developed several predictors specialized for specific taxanomic groups. The result is a series of five machine learning predictors for protein sequences for animal, plant, fungus, Gram-positive bacteria, or Gram-negative bacteria sources. Organism Type Possible Localizations Animal Mitochondrion, Nucleus, Endoplasmic reticulum, Extracellular, Cytoplasm, Plasma membrane, Golgi, Lysosome, Peroxisome Plant Mitochondrion, Chloroplast, Nucleus, Endoplasmic reticulum, Extracellular, Cytoplasm, Plasma membrane, Golgi, Peroxisome, Vacuole Fungi Mitochondrion, Nucleus, Endoplasmic reticulum, Extracellular, Cytoplasm, Plasma membrane, Golgi, Peroxisome, Vacuole Gram-positive bacteria Extracellular, Cytoplasm, Plasma membrane Gram-negative bacteria Inner membrane, Extracellular, Cytoplasm, Periplasm, Outer membrane

Sample Sequences These files each contain 2 sample sequences from their corresponding taxanomic group. You can copy sequences from one of these files and paste them in the textbox above (Please ensure that you've selected the correct organism type radio button as well). Sample Animal Sequences Sample Plant Sequences Sample Fungus Sequences Sample Gram-positive Bacteria Sequences Sample Gram-negative Bacteria Sequences

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Analysis Persistence Policy Please note that data uploaded to the Proteome Analyst Subcellular Localization Server and results from analyses perfomed on it may be erased from the server 1 week after submission.