CISA: Supplementary Materials

References

1. X. Wan and G. Lin.
   CISA: Combined NMR Resonance Connectivity Information Determination and Sequential Assignment.
   IEEE/ACM Transactions on Computational Biology and Bioinformatics.
   Submitted for publication.

Release Notes

1. On May 8, 2006, the following supplementary materials were released:
   • CISA linux executable (Redhat 9.0), including a configuration file and several data files (tar and gzipped, 900KB). Use command line:
     prompt> ./chain [t]
     where t is an optional parameter in between 0.25 and 0.6 and the smaller t indicates easier instances. It expects 4 files at the same directory, "seq.dat", "ss.dat", "Ansas.spin", and "Ansas.spin.inter".

   • 12 protein datasets using chemical shift combination (HN, N, CA, CB) in Experiment #1 (tar and gzipped, 58KB);
   • 10 protein datasets using chemical shift combination (HN, N, CA, CB, CO) in Experiment #2 (tar and gzipped, 46KB);
   • 23 protein datasets using chemical shift combination (HN, N, CA, CB) or (HN, N, CA, CB, CO), depending on their availability, in Experiment #3 (tar and gzipped, 131KB).

Acknowledgments

This research is partially supported by AICML, CFI, NSERC, and PENCE.

Feedback

Please email ghlin[at]cs[dot]ualberta[dot]ca for any additional questions you might have.