Starting a new analysis
Complete the form beginning under the heading "Begin an Analysis:"
Specify a "Submission Title"
Give a title to your analysis, for example: Experiment 47
Specify the input sequences
All sequences must be in standard one-letter code for 20 amino
acids. Sequences can be uploaded in 2 ways:
Select a FastA file on
your local disk by
browsing for files using the "Browse" button located to the far right of the label "FastA file of Sequences:".
- Paste a single sequence or a number of sequences in FastA format
the lower area to the right of the label "FastA Sequences:"
- Be sure if you are uploading a file that the "FastA file of Sequences" option is selected, and if you are pasting in your sequences that the "FastA Sequences:" option is selected.
Sample FastA Files for our organism groups are available here.
Select the correct organism type
Select the taxonomic category of your sequences (Ex. Animal) by pressing a button to the left of the desired category's name.
This selection determines candidate localization sites (Ex. chloroplast for plants).
Submit the job
Click on the "Submit Protein/Proteome for Analysis" button.
A page will be displayed informing you of the unique Analysis ID (AID) assigned to your job:
Please record your AID as you will need it to retrieve your results.
For analyses run on only a handful of sequences you may wish to follow the link marked "this page" and press the refresh button on your browser occasionally until a the page displays a link to your finished job. Small sequence sets should be finished processing in a matter of minutes.