Proteome Analyst

Proteome Analyst Specialized Subcellular Localization Server v2.5

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Summary

The Proteome Analyst Specialized Subcellular Localization Server (PA-SUB) is part of Proteome Analyst (PA). PA is a web server built to predict protein properties, such as general function, in a high-throughput fashion. PA-SUB is specialized to predict the subcellular localization of proteins using established machine learning techniques.

Please cite:
Z. Lu, D. Szafron, R. Greiner, P. Lu, D.S. Wishart, B. Poulin, J. Anvik, C. Macdonell, and R. Eisner, Predicting Subcellular Localization of Proteins using Machine-Learned Classifiers, Bioinformatics 2004 20(4):547-556. abstract | pdf

Begin and View Analyses

Goto PA-SUB Server

More Information

For more information on Proteome Analyst Subcellular Predictions go to http://www.cs.ualberta.ca/~bioinfo/PA/Subcellular/.

Because different organisms have different localization sites, we have developed several predictors specialized for specific taxanomic groups. The result is a series of five machine learning predictors for protein sequences for animal, plant, fungus, Gram-positive bacteria, or Gram-negative bacteria sources.

Organism TypePossible Localizations
AnimalMitochondrion, Nucleus, Endoplasmic reticulum, Extracellular,
Cytoplasm, Plasma membrane, Golgi, Lysosome, Peroxisome
PlantMitochondrion, Chloroplast, Nucleus, Endoplasmic reticulum,
Extracellular, Cytoplasm, Plasma membrane, Golgi, Peroxisome, Vacuole
FungiMitochondrion, Nucleus, Endoplasmic reticulum, Extracellular,
Cytoplasm, Plasma membrane, Golgi, Peroxisome, Vacuole
Gram-positive bacteriaExtracellular, Cytoplasm, Plasma membrane
Gram-negative bacteriaInner membrane, Extracellular, Cytoplasm,
Periplasm, Outer membrane

Sample Sequences

These files each contain 2 sample sequences from their corresponding taxanomic group.
You can copy sequences from one of these files and paste them in the textbox above
(Please ensure that you've selected the correct organism type radio button as well).
Sample Animal Sequences
Sample Plant Sequences
Sample Fungus Sequences
Sample Gram-positive Bacteria Sequences
Sample Gram-negative Bacteria Sequences



Help

Usage Instruction · Output Description

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Analysis Persistence Policy

Please note that data uploaded to the Proteome Analyst Subcellular Localization Server and results from analyses perfomed on it may be erased from the server 1 week after submission.